Beacon Threat Intelligence
Security intelligence for the agent supply chain
Every MCP server and agent skill the public registries list, matched to its source repository, with Beacon's rating of what it can do to your agent and your machine.
| Name | Risk |
|---|---|
| ffmpeg-video-editor bryanwhl/ffmpeg-video-editor | |
| slr-prisma brycewang-stanford/auto-empirical-research-skills Guide users through writing a systematic literature review (SLR) following the PRISMA 2020 framework. Use this skill whenever the user mentions 'systematic review', 'systematic literature review', 'SLR', 'PRISMA', 'PRISMA 2020', 'PRISMA flo | |
| aer-statspai brycewang-stanford/auto-empirical-research-skills Use when aer-identification has fixed the design, after methodology choice and before aer-robustness or aer-tables-figures, to run an AER-track analysis with StatsPAI — the agent-native Python engine and MCP server for causal inference, rob | |
| agent-browser brycewang-stanford/auto-empirical-research-skills Browser automation CLI for AI agents. Use when the user needs to interact with websites, including navigating pages, filling forms, clicking buttons, taking screenshots, extracting data, testing web apps, or automating any browser task. Tri | |
| biomedical-skills brycewang-stanford/auto-empirical-research-skills 24 biomedical research skills. Trigger: medical research, clinical trials, genomics, bioinformatics. Design: domain databases, wet-lab/dry-lab methods, and ethical compliance guides. | |
| bokeh-visualization-guide brycewang-stanford/auto-empirical-research-skills Guide to Bokeh for interactive browser-based research visualizations | |
| boolean-search-guide brycewang-stanford/auto-empirical-research-skills Master Boolean operators and advanced search syntax for academic databases | |
| checking-chembl-for-structured-sar-data brycewang-stanford/auto-empirical-research-skills Check if medicinal chemistry papers are in ChEMBL database to access curated bioactivity data | |
| clinicaltrials-api brycewang-stanford/auto-empirical-research-skills Clinical trial registry database search API | |
| comm-lit-review brycewang-stanford/auto-empirical-research-skills Communications-domain literature review and related-work search with database-aware source control. Use when the task is about communications, wireless, networking, satellite/NTN, Wi-Fi, cellular, transport protocols, congestion control, ro | |
| conservation-biology-guide brycewang-stanford/auto-empirical-research-skills Apply conservation biology methods, databases, and assessment tools | |
| courtlistener-api brycewang-stanford/auto-empirical-research-skills Legal case law database with PACER data and judge profiles | |
| database-comparison-guide brycewang-stanford/auto-empirical-research-skills Compare major academic databases and when to use each for research | |
| deep-literature-search brycewang-stanford/auto-empirical-research-skills Multi-source exhaustive literature search across academic databases | |
| economics-skills brycewang-stanford/auto-empirical-research-skills 9 economics skills. Trigger: economic modeling, policy analysis, macroeconomic data, FRED. Design: theory plus empirical methods with standard economics databases. | |
| economist-data-skill brycewang-stanford/auto-empirical-research-skills Guide economists to authoritative data sources with explicit, confirmed data specifications before retrieval; interfaces with Playwright MCP to navigate portals and extract real data, not articles about data. | |
| eric-education-api brycewang-stanford/auto-empirical-research-skills Search 2M+ education research records via the ERIC database API | |
| findpapers-guide brycewang-stanford/auto-empirical-research-skills Search multiple academic databases simultaneously with Findpapers | |
| g1 brycewang-stanford/auto-empirical-research-skills VS-Enhanced Journal Matcher with Journal Intelligence MCP — Real-time journal data pipeline
with checkpoint-based human decisions. Uses OpenAlex + Crossref APIs for live metrics.
Light VS applied: Avoids IF-centric recommendations + multi-d | |
| i1 brycewang-stanford/auto-empirical-research-skills Paper Retrieval Agent - Multi-database paper fetching from Semantic Scholar, OpenAlex, arXiv
Handles rate limiting, deduplication, and PDF URL extraction
Use when: fetching papers, searching databases, paper retrieval
Triggers: fetch papers | |
| i3 brycewang-stanford/auto-empirical-research-skills RAG Builder with Parallel Document Processing
Vector database construction with local embeddings (zero cost)
Handles PDF download, text extraction, chunking, and vector database creation
Absorbed B5 (Parallel Document Processor) capabilitie | |
| law-skills brycewang-stanford/auto-empirical-research-skills 9 legal research skills. Trigger: legal research, case law analysis, regulatory compliance. Design: legal databases, citation networks, and judicial analytics tools. | |
| literature-review-tools brycewang-stanford/auto-empirical-research-skills Recommend AND run open-source AI tools, agents, Claude Code / Codex skills, and MCP servers for any stage of a literature review — searching, reading, extracting, synthesizing, screening, citation-checking, and paper writing. Use when the u | |
| literature-survey-generator brycewang-stanford/auto-empirical-research-skills Generate a complete academic literature survey from scratch using multi-agent orchestration. Searches academic databases (OpenAlex, CrossRef, Unpaywall), downloads PDFs, builds BibTeX, drafts a LaTeX review, compiles it, reviews for quality | |
| nasa-ads-api brycewang-stanford/auto-empirical-research-skills Search astrophysics and physics literature via NASA ADS bibliographic database | |
| notero-zotero-notion-guide brycewang-stanford/auto-empirical-research-skills Sync Zotero references and annotations to Notion databases | |
| obsidian-bases brycewang-stanford/auto-empirical-research-skills Create and edit Obsidian Bases (.base files) with views, filters, formulas, and summaries. Use when working with .base files, creating database-like views of notes, or when the user mentions Bases, table views, card views, filters, or formu | |
| obsidian-literature-workflow brycewang-stanford/auto-empirical-research-skills Use this skill when the user keeps paper notes inside an Obsidian project knowledge base and wants filesystem-first literature review, explicit agent-first Zotero ingestion, `Papers/` plus `Knowledge/` synthesis, collection-wide normalizati | |
| obsidian-project-memory brycewang-stanford/auto-empirical-research-skills This skill should be used when the user asks to maintain an Obsidian knowledge base for a research project, import an existing research repository into Obsidian, keep project memory or daily notes synchronized, summarize project context int | |
| physics-skills brycewang-stanford/auto-empirical-research-skills 5 physics & astrophysics skills. Trigger: physics simulations, astronomical data, computational physics. Design: domain databases (NASA ADS, arXiv) and simulation tool guides. | |
| quickgo-api brycewang-stanford/auto-empirical-research-skills Browse and search Gene Ontology annotations via the QuickGO API | |
| result-to-claim brycewang-stanford/auto-empirical-research-skills Use when experiments complete to judge what claims the results support, what they don't, and what evidence is still missing. Codex MCP evaluates results against intended claims and routes to next action (pivot, supplement, or confirm). Use | |
| search-skills brycewang-stanford/auto-empirical-research-skills 31 database search skills. Trigger: finding papers, search strategies, querying academic databases. Design: one skill per database/tool with API details, query syntax, and rate limits. | |
| setup brycewang-stanford/auto-empirical-research-skills Diverga v12.0 setup wizard. 4-step researcher profile setup.
Captures discipline, experience, tools, database access, and Agent Teams + VS Arena preference.
Triggers: setup, configure, 설정, install | |
| literature-review brycewang-stanford/auto-empirical-research-skills Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthe | |
| literature-review brycewang-stanford/auto-empirical-research-skills Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthe | |
| auto-review-loop brycewang-stanford/auto-empirical-research-skills Autonomous multi-round research review loop. Repeatedly reviews via Codex MCP, implements fixes, and re-reviews until positive assessment or max rounds reached. Use when user says "auto review loop", "review until it passes", or wants auton | |
| auto-review-loop-llm brycewang-stanford/auto-empirical-research-skills Autonomous research review loop using any OpenAI-compatible LLM API. Configure via llm-chat MCP server or environment variables. Trigger with "auto review loop llm" or "llm review". | |
| auto-review-loop-minimax brycewang-stanford/auto-empirical-research-skills Autonomous multi-round research review loop using MiniMax API. Use when you want to use MiniMax instead of Codex MCP for external review. Trigger with "auto review loop minimax" or "minimax review". | |
| research-review brycewang-stanford/auto-empirical-research-skills Get a deep critical review of research from GPT via Codex MCP. Use when user says "review my research", "help me review", "get external review", or wants critical feedback on research ideas, papers, or experimental results. | |
| auto-paper-improvement-loop brycewang-stanford/auto-empirical-research-skills Autonomously improve a generated paper via Claude review through claude-review MCP → implement fixes → recompile, for 2 rounds. Use when user says "改论文", "improve paper", "论文润色循环", "auto improve", or wants to iteratively polish a generated | |
| auto-review-loop brycewang-stanford/auto-empirical-research-skills Autonomous multi-round research review loop. Repeatedly reviews using Claude Code via claude-review MCP, implements fixes, and re-reviews until positive assessment or max rounds reached. Use when user says "auto review loop", "review until | |
| research-review brycewang-stanford/auto-empirical-research-skills Get a deep critical review of research from Claude via claude-review MCP. Use when user says "review my research", "help me review", "get external review", or wants critical feedback on research ideas, papers, or experimental results. | |
| auto-paper-improvement-loop brycewang-stanford/auto-empirical-research-skills Autonomously improve a generated paper via Gemini review through gemini-review MCP → implement fixes → recompile, for 2 rounds. Use when user says "改论文", "improve paper", "论文润色循环", "auto improve", or wants to iteratively polish a generated | |
| auto-review-loop brycewang-stanford/auto-empirical-research-skills Autonomous multi-round research review loop. Repeatedly reviews using Gemini via gemini-review MCP, implements fixes, and re-reviews until positive assessment or max rounds reached. Use when user says "auto review loop", "review until it pa | |
| research-review brycewang-stanford/auto-empirical-research-skills Get a deep critical review of research from Gemini via gemini-review MCP. Use when user says "review my research", "help me review", "get external review", or wants critical feedback on research ideas, papers, or experimental results. | |
| auto-review-loop-llm brycewang-stanford/auto-empirical-research-skills Autonomous research review loop using any OpenAI-compatible LLM API. Configure via llm-chat MCP server or environment variables. Trigger with "auto review loop llm" or "llm review". | |
| auto-review-loop-minimax brycewang-stanford/auto-empirical-research-skills Autonomous multi-round research review loop using MiniMax API. Use when you want to use MiniMax instead of Codex MCP for external review. Trigger with "auto review loop minimax" or "minimax review". | |
| stata brycewang-stanford/auto-empirical-research-skills Show mcp-stata identity, connected tools, and status. Use when the user asks if mcp-stata is available, asks about access to the toolkit, or asks what Stata tools are connected. | |
| stata-environment-diagnose brycewang-stanford/auto-empirical-research-skills Diagnose local Stata, MCP, package, startup, graph-export, and permissions issues. Use when setup is failing, Stata is not discovered, packages are missing, logs are truncated, or a managed machine behaves differently from a normal workstat |
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